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spotfire version 6.5  (TIBCO)


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    TIBCO spotfire version 6.5
    Spotfire Version 6.5, supplied by TIBCO, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/spotfire+6%2E5/tibco+spotfire+6+0+0/us12343358-1062-4-8
    Average 90 stars, based on 1 article reviews
    spotfire version 6.5 - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    Software:

    Article Title: CPSF3-dependent pre-mRNA processing as a druggable node in AML and Ewing’s sarcoma
    Article Snippet: Software and code Policy information about availability of computer code Data collection - Flow cytometry: LSR Fortessa cell analyzer (BD Biosciences) - Cmpd mass spec: Sciex 6500+ triple quad mass spectrometer - Chemoprot mass spec: LTQ Orbitrap Elite (Thermo) - RT-qPCR: ViiA-7 qPCR instrument (Applied Biosystems) - Cell viability screening assay: Perkin Elmer Viewlux or Envision plate readers - Gel or film analysis: ChemiDoc (BioRad) - Imaging smFISH and IHC: Axioimager Z1 microscope (Zeiss) - RNA sequencing: HiSeq2500 platform (Illumina) - X-ray data: Pilatus 6M detector at the Advanced Photon Source beamline Data analysis - Flow cytometry: FlowJo v10 (Flowjo LLC) - siRNA screening: RSA, GeneMANIA (genemania.org), Spotfire 6.5 (Tibco) - X-ray data analysis: autoPROC, PHASER, coot, BUSTER - Image analysis: Zen (Zeiss), Matlab (Mathworks), ImageJ - Chemoprot mass spec: Trans-proteomic pipeline (TPP) modules (Institute for Systems Biology), Mascot v 2.5.1 (Matrix Science), ProteinProphet (proteinprophet.sourceforge.net) - RNA-seq data processing o STAR v2.5.0a, read alignments (to hg19) o SAMtools v1.3.1, indexing of aligned/sorted reads - Differential gene expression and read-through analysis o QuasR v1.14.0, read counts o edgeR v3.22.3, differential expression analysis o R v3.5.0 (statistical language platform for running QuasR and edgeR) 2 nature research | reporting sum m ary O ctober 2018 o Metascape (metascape.org) For manuscripts utilizing custom algorithms or software that are central to the research but not yet described in published literature, software must be made available to editors/reviewers.

    Flow Cytometry:

    Article Title: CPSF3-dependent pre-mRNA processing as a druggable node in AML and Ewing’s sarcoma
    Article Snippet: Software and code Policy information about availability of computer code Data collection - Flow cytometry: LSR Fortessa cell analyzer (BD Biosciences) - Cmpd mass spec: Sciex 6500+ triple quad mass spectrometer - Chemoprot mass spec: LTQ Orbitrap Elite (Thermo) - RT-qPCR: ViiA-7 qPCR instrument (Applied Biosystems) - Cell viability screening assay: Perkin Elmer Viewlux or Envision plate readers - Gel or film analysis: ChemiDoc (BioRad) - Imaging smFISH and IHC: Axioimager Z1 microscope (Zeiss) - RNA sequencing: HiSeq2500 platform (Illumina) - X-ray data: Pilatus 6M detector at the Advanced Photon Source beamline Data analysis - Flow cytometry: FlowJo v10 (Flowjo LLC) - siRNA screening: RSA, GeneMANIA (genemania.org), Spotfire 6.5 (Tibco) - X-ray data analysis: autoPROC, PHASER, coot, BUSTER - Image analysis: Zen (Zeiss), Matlab (Mathworks), ImageJ - Chemoprot mass spec: Trans-proteomic pipeline (TPP) modules (Institute for Systems Biology), Mascot v 2.5.1 (Matrix Science), ProteinProphet (proteinprophet.sourceforge.net) - RNA-seq data processing o STAR v2.5.0a, read alignments (to hg19) o SAMtools v1.3.1, indexing of aligned/sorted reads - Differential gene expression and read-through analysis o QuasR v1.14.0, read counts o edgeR v3.22.3, differential expression analysis o R v3.5.0 (statistical language platform for running QuasR and edgeR) 2 nature research | reporting sum m ary O ctober 2018 o Metascape (metascape.org) For manuscripts utilizing custom algorithms or software that are central to the research but not yet described in published literature, software must be made available to editors/reviewers.

    Mass Spectrometry:

    Article Title: CPSF3-dependent pre-mRNA processing as a druggable node in AML and Ewing’s sarcoma
    Article Snippet: Software and code Policy information about availability of computer code Data collection - Flow cytometry: LSR Fortessa cell analyzer (BD Biosciences) - Cmpd mass spec: Sciex 6500+ triple quad mass spectrometer - Chemoprot mass spec: LTQ Orbitrap Elite (Thermo) - RT-qPCR: ViiA-7 qPCR instrument (Applied Biosystems) - Cell viability screening assay: Perkin Elmer Viewlux or Envision plate readers - Gel or film analysis: ChemiDoc (BioRad) - Imaging smFISH and IHC: Axioimager Z1 microscope (Zeiss) - RNA sequencing: HiSeq2500 platform (Illumina) - X-ray data: Pilatus 6M detector at the Advanced Photon Source beamline Data analysis - Flow cytometry: FlowJo v10 (Flowjo LLC) - siRNA screening: RSA, GeneMANIA (genemania.org), Spotfire 6.5 (Tibco) - X-ray data analysis: autoPROC, PHASER, coot, BUSTER - Image analysis: Zen (Zeiss), Matlab (Mathworks), ImageJ - Chemoprot mass spec: Trans-proteomic pipeline (TPP) modules (Institute for Systems Biology), Mascot v 2.5.1 (Matrix Science), ProteinProphet (proteinprophet.sourceforge.net) - RNA-seq data processing o STAR v2.5.0a, read alignments (to hg19) o SAMtools v1.3.1, indexing of aligned/sorted reads - Differential gene expression and read-through analysis o QuasR v1.14.0, read counts o edgeR v3.22.3, differential expression analysis o R v3.5.0 (statistical language platform for running QuasR and edgeR) 2 nature research | reporting sum m ary O ctober 2018 o Metascape (metascape.org) For manuscripts utilizing custom algorithms or software that are central to the research but not yet described in published literature, software must be made available to editors/reviewers.

    Real-time Polymerase Chain Reaction:

    Article Title: CPSF3-dependent pre-mRNA processing as a druggable node in AML and Ewing’s sarcoma
    Article Snippet: Software and code Policy information about availability of computer code Data collection - Flow cytometry: LSR Fortessa cell analyzer (BD Biosciences) - Cmpd mass spec: Sciex 6500+ triple quad mass spectrometer - Chemoprot mass spec: LTQ Orbitrap Elite (Thermo) - RT-qPCR: ViiA-7 qPCR instrument (Applied Biosystems) - Cell viability screening assay: Perkin Elmer Viewlux or Envision plate readers - Gel or film analysis: ChemiDoc (BioRad) - Imaging smFISH and IHC: Axioimager Z1 microscope (Zeiss) - RNA sequencing: HiSeq2500 platform (Illumina) - X-ray data: Pilatus 6M detector at the Advanced Photon Source beamline Data analysis - Flow cytometry: FlowJo v10 (Flowjo LLC) - siRNA screening: RSA, GeneMANIA (genemania.org), Spotfire 6.5 (Tibco) - X-ray data analysis: autoPROC, PHASER, coot, BUSTER - Image analysis: Zen (Zeiss), Matlab (Mathworks), ImageJ - Chemoprot mass spec: Trans-proteomic pipeline (TPP) modules (Institute for Systems Biology), Mascot v 2.5.1 (Matrix Science), ProteinProphet (proteinprophet.sourceforge.net) - RNA-seq data processing o STAR v2.5.0a, read alignments (to hg19) o SAMtools v1.3.1, indexing of aligned/sorted reads - Differential gene expression and read-through analysis o QuasR v1.14.0, read counts o edgeR v3.22.3, differential expression analysis o R v3.5.0 (statistical language platform for running QuasR and edgeR) 2 nature research | reporting sum m ary O ctober 2018 o Metascape (metascape.org) For manuscripts utilizing custom algorithms or software that are central to the research but not yet described in published literature, software must be made available to editors/reviewers.

    Screening Assay:

    Article Title: CPSF3-dependent pre-mRNA processing as a druggable node in AML and Ewing’s sarcoma
    Article Snippet: Software and code Policy information about availability of computer code Data collection - Flow cytometry: LSR Fortessa cell analyzer (BD Biosciences) - Cmpd mass spec: Sciex 6500+ triple quad mass spectrometer - Chemoprot mass spec: LTQ Orbitrap Elite (Thermo) - RT-qPCR: ViiA-7 qPCR instrument (Applied Biosystems) - Cell viability screening assay: Perkin Elmer Viewlux or Envision plate readers - Gel or film analysis: ChemiDoc (BioRad) - Imaging smFISH and IHC: Axioimager Z1 microscope (Zeiss) - RNA sequencing: HiSeq2500 platform (Illumina) - X-ray data: Pilatus 6M detector at the Advanced Photon Source beamline Data analysis - Flow cytometry: FlowJo v10 (Flowjo LLC) - siRNA screening: RSA, GeneMANIA (genemania.org), Spotfire 6.5 (Tibco) - X-ray data analysis: autoPROC, PHASER, coot, BUSTER - Image analysis: Zen (Zeiss), Matlab (Mathworks), ImageJ - Chemoprot mass spec: Trans-proteomic pipeline (TPP) modules (Institute for Systems Biology), Mascot v 2.5.1 (Matrix Science), ProteinProphet (proteinprophet.sourceforge.net) - RNA-seq data processing o STAR v2.5.0a, read alignments (to hg19) o SAMtools v1.3.1, indexing of aligned/sorted reads - Differential gene expression and read-through analysis o QuasR v1.14.0, read counts o edgeR v3.22.3, differential expression analysis o R v3.5.0 (statistical language platform for running QuasR and edgeR) 2 nature research | reporting sum m ary O ctober 2018 o Metascape (metascape.org) For manuscripts utilizing custom algorithms or software that are central to the research but not yet described in published literature, software must be made available to editors/reviewers.

    Imaging:

    Article Title: CPSF3-dependent pre-mRNA processing as a druggable node in AML and Ewing’s sarcoma
    Article Snippet: Software and code Policy information about availability of computer code Data collection - Flow cytometry: LSR Fortessa cell analyzer (BD Biosciences) - Cmpd mass spec: Sciex 6500+ triple quad mass spectrometer - Chemoprot mass spec: LTQ Orbitrap Elite (Thermo) - RT-qPCR: ViiA-7 qPCR instrument (Applied Biosystems) - Cell viability screening assay: Perkin Elmer Viewlux or Envision plate readers - Gel or film analysis: ChemiDoc (BioRad) - Imaging smFISH and IHC: Axioimager Z1 microscope (Zeiss) - RNA sequencing: HiSeq2500 platform (Illumina) - X-ray data: Pilatus 6M detector at the Advanced Photon Source beamline Data analysis - Flow cytometry: FlowJo v10 (Flowjo LLC) - siRNA screening: RSA, GeneMANIA (genemania.org), Spotfire 6.5 (Tibco) - X-ray data analysis: autoPROC, PHASER, coot, BUSTER - Image analysis: Zen (Zeiss), Matlab (Mathworks), ImageJ - Chemoprot mass spec: Trans-proteomic pipeline (TPP) modules (Institute for Systems Biology), Mascot v 2.5.1 (Matrix Science), ProteinProphet (proteinprophet.sourceforge.net) - RNA-seq data processing o STAR v2.5.0a, read alignments (to hg19) o SAMtools v1.3.1, indexing of aligned/sorted reads - Differential gene expression and read-through analysis o QuasR v1.14.0, read counts o edgeR v3.22.3, differential expression analysis o R v3.5.0 (statistical language platform for running QuasR and edgeR) 2 nature research | reporting sum m ary O ctober 2018 o Metascape (metascape.org) For manuscripts utilizing custom algorithms or software that are central to the research but not yet described in published literature, software must be made available to editors/reviewers.

    Immunohistochemistry:

    Article Title: CPSF3-dependent pre-mRNA processing as a druggable node in AML and Ewing’s sarcoma
    Article Snippet: Software and code Policy information about availability of computer code Data collection - Flow cytometry: LSR Fortessa cell analyzer (BD Biosciences) - Cmpd mass spec: Sciex 6500+ triple quad mass spectrometer - Chemoprot mass spec: LTQ Orbitrap Elite (Thermo) - RT-qPCR: ViiA-7 qPCR instrument (Applied Biosystems) - Cell viability screening assay: Perkin Elmer Viewlux or Envision plate readers - Gel or film analysis: ChemiDoc (BioRad) - Imaging smFISH and IHC: Axioimager Z1 microscope (Zeiss) - RNA sequencing: HiSeq2500 platform (Illumina) - X-ray data: Pilatus 6M detector at the Advanced Photon Source beamline Data analysis - Flow cytometry: FlowJo v10 (Flowjo LLC) - siRNA screening: RSA, GeneMANIA (genemania.org), Spotfire 6.5 (Tibco) - X-ray data analysis: autoPROC, PHASER, coot, BUSTER - Image analysis: Zen (Zeiss), Matlab (Mathworks), ImageJ - Chemoprot mass spec: Trans-proteomic pipeline (TPP) modules (Institute for Systems Biology), Mascot v 2.5.1 (Matrix Science), ProteinProphet (proteinprophet.sourceforge.net) - RNA-seq data processing o STAR v2.5.0a, read alignments (to hg19) o SAMtools v1.3.1, indexing of aligned/sorted reads - Differential gene expression and read-through analysis o QuasR v1.14.0, read counts o edgeR v3.22.3, differential expression analysis o R v3.5.0 (statistical language platform for running QuasR and edgeR) 2 nature research | reporting sum m ary O ctober 2018 o Metascape (metascape.org) For manuscripts utilizing custom algorithms or software that are central to the research but not yet described in published literature, software must be made available to editors/reviewers.

    Microscopy:

    Article Title: CPSF3-dependent pre-mRNA processing as a druggable node in AML and Ewing’s sarcoma
    Article Snippet: Software and code Policy information about availability of computer code Data collection - Flow cytometry: LSR Fortessa cell analyzer (BD Biosciences) - Cmpd mass spec: Sciex 6500+ triple quad mass spectrometer - Chemoprot mass spec: LTQ Orbitrap Elite (Thermo) - RT-qPCR: ViiA-7 qPCR instrument (Applied Biosystems) - Cell viability screening assay: Perkin Elmer Viewlux or Envision plate readers - Gel or film analysis: ChemiDoc (BioRad) - Imaging smFISH and IHC: Axioimager Z1 microscope (Zeiss) - RNA sequencing: HiSeq2500 platform (Illumina) - X-ray data: Pilatus 6M detector at the Advanced Photon Source beamline Data analysis - Flow cytometry: FlowJo v10 (Flowjo LLC) - siRNA screening: RSA, GeneMANIA (genemania.org), Spotfire 6.5 (Tibco) - X-ray data analysis: autoPROC, PHASER, coot, BUSTER - Image analysis: Zen (Zeiss), Matlab (Mathworks), ImageJ - Chemoprot mass spec: Trans-proteomic pipeline (TPP) modules (Institute for Systems Biology), Mascot v 2.5.1 (Matrix Science), ProteinProphet (proteinprophet.sourceforge.net) - RNA-seq data processing o STAR v2.5.0a, read alignments (to hg19) o SAMtools v1.3.1, indexing of aligned/sorted reads - Differential gene expression and read-through analysis o QuasR v1.14.0, read counts o edgeR v3.22.3, differential expression analysis o R v3.5.0 (statistical language platform for running QuasR and edgeR) 2 nature research | reporting sum m ary O ctober 2018 o Metascape (metascape.org) For manuscripts utilizing custom algorithms or software that are central to the research but not yet described in published literature, software must be made available to editors/reviewers.

    RNA Sequencing:

    Article Title: CPSF3-dependent pre-mRNA processing as a druggable node in AML and Ewing’s sarcoma
    Article Snippet: Software and code Policy information about availability of computer code Data collection - Flow cytometry: LSR Fortessa cell analyzer (BD Biosciences) - Cmpd mass spec: Sciex 6500+ triple quad mass spectrometer - Chemoprot mass spec: LTQ Orbitrap Elite (Thermo) - RT-qPCR: ViiA-7 qPCR instrument (Applied Biosystems) - Cell viability screening assay: Perkin Elmer Viewlux or Envision plate readers - Gel or film analysis: ChemiDoc (BioRad) - Imaging smFISH and IHC: Axioimager Z1 microscope (Zeiss) - RNA sequencing: HiSeq2500 platform (Illumina) - X-ray data: Pilatus 6M detector at the Advanced Photon Source beamline Data analysis - Flow cytometry: FlowJo v10 (Flowjo LLC) - siRNA screening: RSA, GeneMANIA (genemania.org), Spotfire 6.5 (Tibco) - X-ray data analysis: autoPROC, PHASER, coot, BUSTER - Image analysis: Zen (Zeiss), Matlab (Mathworks), ImageJ - Chemoprot mass spec: Trans-proteomic pipeline (TPP) modules (Institute for Systems Biology), Mascot v 2.5.1 (Matrix Science), ProteinProphet (proteinprophet.sourceforge.net) - RNA-seq data processing o STAR v2.5.0a, read alignments (to hg19) o SAMtools v1.3.1, indexing of aligned/sorted reads - Differential gene expression and read-through analysis o QuasR v1.14.0, read counts o edgeR v3.22.3, differential expression analysis o R v3.5.0 (statistical language platform for running QuasR and edgeR) 2 nature research | reporting sum m ary O ctober 2018 o Metascape (metascape.org) For manuscripts utilizing custom algorithms or software that are central to the research but not yet described in published literature, software must be made available to editors/reviewers.

    Gene Expression:

    Article Title: CPSF3-dependent pre-mRNA processing as a druggable node in AML and Ewing’s sarcoma
    Article Snippet: Software and code Policy information about availability of computer code Data collection - Flow cytometry: LSR Fortessa cell analyzer (BD Biosciences) - Cmpd mass spec: Sciex 6500+ triple quad mass spectrometer - Chemoprot mass spec: LTQ Orbitrap Elite (Thermo) - RT-qPCR: ViiA-7 qPCR instrument (Applied Biosystems) - Cell viability screening assay: Perkin Elmer Viewlux or Envision plate readers - Gel or film analysis: ChemiDoc (BioRad) - Imaging smFISH and IHC: Axioimager Z1 microscope (Zeiss) - RNA sequencing: HiSeq2500 platform (Illumina) - X-ray data: Pilatus 6M detector at the Advanced Photon Source beamline Data analysis - Flow cytometry: FlowJo v10 (Flowjo LLC) - siRNA screening: RSA, GeneMANIA (genemania.org), Spotfire 6.5 (Tibco) - X-ray data analysis: autoPROC, PHASER, coot, BUSTER - Image analysis: Zen (Zeiss), Matlab (Mathworks), ImageJ - Chemoprot mass spec: Trans-proteomic pipeline (TPP) modules (Institute for Systems Biology), Mascot v 2.5.1 (Matrix Science), ProteinProphet (proteinprophet.sourceforge.net) - RNA-seq data processing o STAR v2.5.0a, read alignments (to hg19) o SAMtools v1.3.1, indexing of aligned/sorted reads - Differential gene expression and read-through analysis o QuasR v1.14.0, read counts o edgeR v3.22.3, differential expression analysis o R v3.5.0 (statistical language platform for running QuasR and edgeR) 2 nature research | reporting sum m ary O ctober 2018 o Metascape (metascape.org) For manuscripts utilizing custom algorithms or software that are central to the research but not yet described in published literature, software must be made available to editors/reviewers.

    Quantitative Proteomics:

    Article Title: CPSF3-dependent pre-mRNA processing as a druggable node in AML and Ewing’s sarcoma
    Article Snippet: Software and code Policy information about availability of computer code Data collection - Flow cytometry: LSR Fortessa cell analyzer (BD Biosciences) - Cmpd mass spec: Sciex 6500+ triple quad mass spectrometer - Chemoprot mass spec: LTQ Orbitrap Elite (Thermo) - RT-qPCR: ViiA-7 qPCR instrument (Applied Biosystems) - Cell viability screening assay: Perkin Elmer Viewlux or Envision plate readers - Gel or film analysis: ChemiDoc (BioRad) - Imaging smFISH and IHC: Axioimager Z1 microscope (Zeiss) - RNA sequencing: HiSeq2500 platform (Illumina) - X-ray data: Pilatus 6M detector at the Advanced Photon Source beamline Data analysis - Flow cytometry: FlowJo v10 (Flowjo LLC) - siRNA screening: RSA, GeneMANIA (genemania.org), Spotfire 6.5 (Tibco) - X-ray data analysis: autoPROC, PHASER, coot, BUSTER - Image analysis: Zen (Zeiss), Matlab (Mathworks), ImageJ - Chemoprot mass spec: Trans-proteomic pipeline (TPP) modules (Institute for Systems Biology), Mascot v 2.5.1 (Matrix Science), ProteinProphet (proteinprophet.sourceforge.net) - RNA-seq data processing o STAR v2.5.0a, read alignments (to hg19) o SAMtools v1.3.1, indexing of aligned/sorted reads - Differential gene expression and read-through analysis o QuasR v1.14.0, read counts o edgeR v3.22.3, differential expression analysis o R v3.5.0 (statistical language platform for running QuasR and edgeR) 2 nature research | reporting sum m ary O ctober 2018 o Metascape (metascape.org) For manuscripts utilizing custom algorithms or software that are central to the research but not yet described in published literature, software must be made available to editors/reviewers.



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